OISSIT NOAA DATA

Here, I’m trying to get a better sense of how well the SODA temp data represents the SEUS. We found a significant decrease in temperature during the study period, which is not what people who are familiar with conditions in this area say has happened. Most likely, the SODA model doesn’t perform well in shallow near shore areas where survey is performed in southeast US. Therefore, we compared performance to OISST temp. Overall pattern is similar, and not representative of what’s actually happening in this survey area. Therefore, we decided to go with in situ buoy temperature values.

library(ncdf4)
library(raster)

Loading required package: sp

Attaching package: ‘raster’

The following object is masked from ‘package:dplyr’:

    select

The following object is masked from ‘package:tidyr’:

    extract

The following object is masked from ‘package:lme4’:

    getData

The following object is masked from ‘package:data.table’:

    shift

library(data.table)

Southeast US (1990–2014, n = 25)

Years downloaded one by one on May 15, 2020 https://psl.noaa.gov/cgi-bin/DataAccess.pl?DB_dataset=NOAA+High-resolution+Blended+Analysis&DB_variable=Sea+Surface+Temperature&DB_statistic=Mean&DB_tid=86107&DB_did=132&DB_vid=2423

#all file names
filenames <- list.files(here::here("Data","Temperature","OISST_NOAA_TEMP_NETCDF"), full.names = T)

OISST.sst <- lapply(filenames, brick)

OISST.sst

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crs        : +proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0 
source     : /Users/zoekitchel/Documents/grad school/Rutgers/Repositories/Col_Ext/Data/Temperature/OISST_NOAA_TEMP_NETCDF/1990.nc 
names      : X1990.01.01, X1990.01.02, X1990.01.03, X1990.01.04, X1990.01.05, X1990.01.06, X1990.01.07, X1990.01.08, X1990.01.09, X1990.01.10, X1990.01.11, X1990.01.12, X1990.01.13, X1990.01.14, X1990.01.15, ... 
Date       : 1990-01-01, 1990-12-31 (min, max)
varname    : sst 


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extent     : 278, 285, 28, 36  (xmin, xmax, ymin, ymax)
crs        : +proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0 
source     : /Users/zoekitchel/Documents/grad school/Rutgers/Repositories/Col_Ext/Data/Temperature/OISST_NOAA_TEMP_NETCDF/1991.nc 
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Date       : 1991-01-01, 1991-12-31 (min, max)
varname    : sst 


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crs        : +proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0 
source     : /Users/zoekitchel/Documents/grad school/Rutgers/Repositories/Col_Ext/Data/Temperature/OISST_NOAA_TEMP_NETCDF/1992.nc 
names      : X1992.01.01, X1992.01.02, X1992.01.03, X1992.01.04, X1992.01.05, X1992.01.06, X1992.01.07, X1992.01.08, X1992.01.09, X1992.01.10, X1992.01.11, X1992.01.12, X1992.01.13, X1992.01.14, X1992.01.15, ... 
Date       : 1992-01-01, 1992-12-31 (min, max)
varname    : sst 


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crs        : +proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0 
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Date       : 1993-01-01, 1993-12-31 (min, max)
varname    : sst 


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crs        : +proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0 
source     : /Users/zoekitchel/Documents/grad school/Rutgers/Repositories/Col_Ext/Data/Temperature/OISST_NOAA_TEMP_NETCDF/1994.nc 
names      : X1994.01.01, X1994.01.02, X1994.01.03, X1994.01.04, X1994.01.05, X1994.01.06, X1994.01.07, X1994.01.08, X1994.01.09, X1994.01.10, X1994.01.11, X1994.01.12, X1994.01.13, X1994.01.14, X1994.01.15, ... 
Date       : 1994-01-01, 1994-12-31 (min, max)
varname    : sst 


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crs        : +proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0 
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Date       : 1995-01-01, 1995-12-31 (min, max)
varname    : sst 


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resolution : 0.25, 0.25  (x, y)
extent     : 278, 285, 28, 36  (xmin, xmax, ymin, ymax)
crs        : +proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0 
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Date       : 1996-01-01, 1996-12-31 (min, max)
varname    : sst 


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crs        : +proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0 
source     : /Users/zoekitchel/Documents/grad school/Rutgers/Repositories/Col_Ext/Data/Temperature/OISST_NOAA_TEMP_NETCDF/1997.nc 
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Date       : 1997-01-01, 1997-12-31 (min, max)
varname    : sst 


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extent     : 278, 285, 28, 36  (xmin, xmax, ymin, ymax)
crs        : +proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0 
source     : /Users/zoekitchel/Documents/grad school/Rutgers/Repositories/Col_Ext/Data/Temperature/OISST_NOAA_TEMP_NETCDF/1998.nc 
names      : X1998.01.01, X1998.01.02, X1998.01.03, X1998.01.04, X1998.01.05, X1998.01.06, X1998.01.07, X1998.01.08, X1998.01.09, X1998.01.10, X1998.01.11, X1998.01.12, X1998.01.13, X1998.01.14, X1998.01.15, ... 
Date       : 1998-01-01, 1998-12-31 (min, max)
varname    : sst 


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crs        : +proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0 
source     : /Users/zoekitchel/Documents/grad school/Rutgers/Repositories/Col_Ext/Data/Temperature/OISST_NOAA_TEMP_NETCDF/1999.nc 
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Date       : 1999-01-01, 1999-12-31 (min, max)
varname    : sst 


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crs        : +proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0 
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Date       : 2000-01-01, 2000-12-31 (min, max)
varname    : sst 


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crs        : +proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0 
source     : /Users/zoekitchel/Documents/grad school/Rutgers/Repositories/Col_Ext/Data/Temperature/OISST_NOAA_TEMP_NETCDF/2001.nc 
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Date       : 2001-01-01, 2001-12-31 (min, max)
varname    : sst 


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resolution : 0.25, 0.25  (x, y)
extent     : 278, 285, 28, 36  (xmin, xmax, ymin, ymax)
crs        : +proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0 
source     : /Users/zoekitchel/Documents/grad school/Rutgers/Repositories/Col_Ext/Data/Temperature/OISST_NOAA_TEMP_NETCDF/2002.nc 
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Date       : 2002-01-01, 2002-12-31 (min, max)
varname    : sst 


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crs        : +proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0 
source     : /Users/zoekitchel/Documents/grad school/Rutgers/Repositories/Col_Ext/Data/Temperature/OISST_NOAA_TEMP_NETCDF/2003.nc 
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Date       : 2003-01-01, 2003-12-31 (min, max)
varname    : sst 


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Date       : 2004-01-01, 2004-12-31 (min, max)
varname    : sst 


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source     : /Users/zoekitchel/Documents/grad school/Rutgers/Repositories/Col_Ext/Data/Temperature/OISST_NOAA_TEMP_NETCDF/2005.nc 
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Date       : 2005-01-01, 2005-12-31 (min, max)
varname    : sst 


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Date       : 2006-01-01, 2006-12-31 (min, max)
varname    : sst 


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crs        : +proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0 
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Date       : 2007-01-01, 2007-12-31 (min, max)
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Date       : 2008-01-01, 2008-12-31 (min, max)
varname    : sst 


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Date       : 2009-01-01, 2009-12-31 (min, max)
varname    : sst 


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Date       : 2010-01-01, 2010-12-31 (min, max)
varname    : sst 


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Date       : 2011-01-01, 2011-12-31 (min, max)
varname    : sst 


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crs        : +proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0 
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Date       : 2012-01-01, 2012-12-31 (min, max)
varname    : sst 


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Date       : 2013-01-01, 2013-12-31 (min, max)
varname    : sst 


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crs        : +proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0 
source     : /Users/zoekitchel/Documents/grad school/Rutgers/Repositories/Col_Ext/Data/Temperature/OISST_NOAA_TEMP_NETCDF/2014.nc 
names      : X2014.01.01, X2014.01.02, X2014.01.03, X2014.01.04, X2014.01.05, X2014.01.06, X2014.01.07, X2014.01.08, X2014.01.09, X2014.01.10, X2014.01.11, X2014.01.12, X2014.01.13, X2014.01.14, X2014.01.15, ... 
Date       : 2014-01-01, 2014-12-31 (min, max)
varname    : sst 


[[26]]
class      : RasterBrick 
dimensions : 32, 28, 896, 365  (nrow, ncol, ncell, nlayers)
resolution : 0.25, 0.25  (x, y)
extent     : 278, 285, 28, 36  (xmin, xmax, ymin, ymax)
crs        : +proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0 
source     : /Users/zoekitchel/Documents/grad school/Rutgers/Repositories/Col_Ext/Data/Temperature/OISST_NOAA_TEMP_NETCDF/2015.nc 
names      : X2015.01.01, X2015.01.02, X2015.01.03, X2015.01.04, X2015.01.05, X2015.01.06, X2015.01.07, X2015.01.08, X2015.01.09, X2015.01.10, X2015.01.11, X2015.01.12, X2015.01.13, X2015.01.14, X2015.01.15, ... 
Date       : 2015-01-01, 2015-12-31 (min, max)
varname    : sst 

#currently, this is in 0-360, needs to be -180-180, so I have to subtract 360˚
OISST.sst_adj <- lapply(OISST.sst, rotate)

this does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this functionthis does not look like an appropriate object for this function

Extract specific GPS values for SE US sampled during during study period

load(here::here("Data","Spp_observations","trawl_coordinates_1996-2000.RData"))

seus_points <- gpspointsonly_quarterdegreeround[region == "SCDNR_SEUS"]

coordinates(seus_points) = ~ lon + lat


temp_values_1990 <- as.data.table(extract(OISST.sst_adj[[1]], seus_points))
temp_values_1991 <- as.data.table(extract(OISST.sst_adj[[2]], seus_points))
temp_values_1992 <- as.data.table(extract(OISST.sst_adj[[3]], seus_points))
temp_values_1993 <- as.data.table(extract(OISST.sst_adj[[4]], seus_points))
temp_values_1994 <- as.data.table(extract(OISST.sst_adj[[5]], seus_points))
temp_values_1995 <- as.data.table(extract(OISST.sst_adj[[6]], seus_points))
temp_values_1996 <- as.data.table(extract(OISST.sst_adj[[7]], seus_points))
temp_values_1997 <- as.data.table(extract(OISST.sst_adj[[8]], seus_points))
temp_values_1998 <- as.data.table(extract(OISST.sst_adj[[9]], seus_points))
temp_values_1999 <- as.data.table(extract(OISST.sst_adj[[10]], seus_points))
temp_values_2000 <- as.data.table(extract(OISST.sst_adj[[11]], seus_points))
temp_values_2001 <- as.data.table(extract(OISST.sst_adj[[12]], seus_points))
temp_values_2002 <- as.data.table(extract(OISST.sst_adj[[13]], seus_points))
temp_values_2003 <- as.data.table(extract(OISST.sst_adj[[14]], seus_points))
temp_values_2004 <- as.data.table(extract(OISST.sst_adj[[15]], seus_points))
temp_values_2005 <- as.data.table(extract(OISST.sst_adj[[16]], seus_points))
temp_values_2006 <- as.data.table(extract(OISST.sst_adj[[17]], seus_points))
temp_values_2007 <- as.data.table(extract(OISST.sst_adj[[18]], seus_points))
temp_values_2008 <- as.data.table(extract(OISST.sst_adj[[19]], seus_points))
temp_values_2009 <- as.data.table(extract(OISST.sst_adj[[20]], seus_points))
temp_values_2010 <- as.data.table(extract(OISST.sst_adj[[21]], seus_points))
temp_values_2011 <- as.data.table(extract(OISST.sst_adj[[22]], seus_points))
temp_values_2012 <- as.data.table(extract(OISST.sst_adj[[23]], seus_points))
temp_values_2013 <- as.data.table(extract(OISST.sst_adj[[24]], seus_points))
temp_values_2014 <- as.data.table(extract(OISST.sst_adj[[25]], seus_points))
temp_values_2015 <- as.data.table(extract(OISST.sst_adj[[26]], seus_points))

plot(OISST.sst_adj[[1]][[1]])
points(seus_points)

object_names <- list(temp_values_1990, temp_values_1991, temp_values_1992, temp_values_1993, temp_values_1994, temp_values_1995, temp_values_1996, temp_values_1997, temp_values_1998, temp_values_1999, temp_values_2000, temp_values_2001, temp_values_2002, temp_values_2003, temp_values_2004, temp_values_2005, temp_values_2006, temp_values_2007, temp_values_2008, temp_values_2009, temp_values_2010, temp_values_2011, temp_values_2012, temp_values_2013, temp_values_2014, temp_values_2015)

allvalues_wide <- do.call("cbind", object_names)

allvalues_wide_latlon <- cbind(seus_points@coords, allvalues_wide)
colnames(allvalues_wide_latlon)

   [1] "lon"         "lat"         "X1990.01.01" "X1990.01.02" "X1990.01.03" "X1990.01.04" "X1990.01.05"
   [8] "X1990.01.06" "X1990.01.07" "X1990.01.08" "X1990.01.09" "X1990.01.10" "X1990.01.11" "X1990.01.12"
  [15] "X1990.01.13" "X1990.01.14" "X1990.01.15" "X1990.01.16" "X1990.01.17" "X1990.01.18" "X1990.01.19"
  [22] "X1990.01.20" "X1990.01.21" "X1990.01.22" "X1990.01.23" "X1990.01.24" "X1990.01.25" "X1990.01.26"
  [29] "X1990.01.27" "X1990.01.28" "X1990.01.29" "X1990.01.30" "X1990.01.31" "X1990.02.01" "X1990.02.02"
  [36] "X1990.02.03" "X1990.02.04" "X1990.02.05" "X1990.02.06" "X1990.02.07" "X1990.02.08" "X1990.02.09"
  [43] "X1990.02.10" "X1990.02.11" "X1990.02.12" "X1990.02.13" "X1990.02.14" "X1990.02.15" "X1990.02.16"
  [50] "X1990.02.17" "X1990.02.18" "X1990.02.19" "X1990.02.20" "X1990.02.21" "X1990.02.22" "X1990.02.23"
  [57] "X1990.02.24" "X1990.02.25" "X1990.02.26" "X1990.02.27" "X1990.02.28" "X1990.03.01" "X1990.03.02"
  [64] "X1990.03.03" "X1990.03.04" "X1990.03.05" "X1990.03.06" "X1990.03.07" "X1990.03.08" "X1990.03.09"
  [71] "X1990.03.10" "X1990.03.11" "X1990.03.12" "X1990.03.13" "X1990.03.14" "X1990.03.15" "X1990.03.16"
  [78] "X1990.03.17" "X1990.03.18" "X1990.03.19" "X1990.03.20" "X1990.03.21" "X1990.03.22" "X1990.03.23"
  [85] "X1990.03.24" "X1990.03.25" "X1990.03.26" "X1990.03.27" "X1990.03.28" "X1990.03.29" "X1990.03.30"
  [92] "X1990.03.31" "X1990.04.01" "X1990.04.02" "X1990.04.03" "X1990.04.04" "X1990.04.05" "X1990.04.06"
  [99] "X1990.04.07" "X1990.04.08" "X1990.04.09" "X1990.04.10" "X1990.04.11" "X1990.04.12" "X1990.04.13"
 [106] "X1990.04.14" "X1990.04.15" "X1990.04.16" "X1990.04.17" "X1990.04.18" "X1990.04.19" "X1990.04.20"
 [113] "X1990.04.21" "X1990.04.22" "X1990.04.23" "X1990.04.24" "X1990.04.25" "X1990.04.26" "X1990.04.27"
 [120] "X1990.04.28" "X1990.04.29" "X1990.04.30" "X1990.05.01" "X1990.05.02" "X1990.05.03" "X1990.05.04"
 [127] "X1990.05.05" "X1990.05.06" "X1990.05.07" "X1990.05.08" "X1990.05.09" "X1990.05.10" "X1990.05.11"
 [134] "X1990.05.12" "X1990.05.13" "X1990.05.14" "X1990.05.15" "X1990.05.16" "X1990.05.17" "X1990.05.18"
 [141] "X1990.05.19" "X1990.05.20" "X1990.05.21" "X1990.05.22" "X1990.05.23" "X1990.05.24" "X1990.05.25"
 [148] "X1990.05.26" "X1990.05.27" "X1990.05.28" "X1990.05.29" "X1990.05.30" "X1990.05.31" "X1990.06.01"
 [155] "X1990.06.02" "X1990.06.03" "X1990.06.04" "X1990.06.05" "X1990.06.06" "X1990.06.07" "X1990.06.08"
 [162] "X1990.06.09" "X1990.06.10" "X1990.06.11" "X1990.06.12" "X1990.06.13" "X1990.06.14" "X1990.06.15"
 [169] "X1990.06.16" "X1990.06.17" "X1990.06.18" "X1990.06.19" "X1990.06.20" "X1990.06.21" "X1990.06.22"
 [176] "X1990.06.23" "X1990.06.24" "X1990.06.25" "X1990.06.26" "X1990.06.27" "X1990.06.28" "X1990.06.29"
 [183] "X1990.06.30" "X1990.07.01" "X1990.07.02" "X1990.07.03" "X1990.07.04" "X1990.07.05" "X1990.07.06"
 [190] "X1990.07.07" "X1990.07.08" "X1990.07.09" "X1990.07.10" "X1990.07.11" "X1990.07.12" "X1990.07.13"
 [197] "X1990.07.14" "X1990.07.15" "X1990.07.16" "X1990.07.17" "X1990.07.18" "X1990.07.19" "X1990.07.20"
 [204] "X1990.07.21" "X1990.07.22" "X1990.07.23" "X1990.07.24" "X1990.07.25" "X1990.07.26" "X1990.07.27"
 [211] "X1990.07.28" "X1990.07.29" "X1990.07.30" "X1990.07.31" "X1990.08.01" "X1990.08.02" "X1990.08.03"
 [218] "X1990.08.04" "X1990.08.05" "X1990.08.06" "X1990.08.07" "X1990.08.08" "X1990.08.09" "X1990.08.10"
 [225] "X1990.08.11" "X1990.08.12" "X1990.08.13" "X1990.08.14" "X1990.08.15" "X1990.08.16" "X1990.08.17"
 [232] "X1990.08.18" "X1990.08.19" "X1990.08.20" "X1990.08.21" "X1990.08.22" "X1990.08.23" "X1990.08.24"
 [239] "X1990.08.25" "X1990.08.26" "X1990.08.27" "X1990.08.28" "X1990.08.29" "X1990.08.30" "X1990.08.31"
 [246] "X1990.09.01" "X1990.09.02" "X1990.09.03" "X1990.09.04" "X1990.09.05" "X1990.09.06" "X1990.09.07"
 [253] "X1990.09.08" "X1990.09.09" "X1990.09.10" "X1990.09.11" "X1990.09.12" "X1990.09.13" "X1990.09.14"
 [260] "X1990.09.15" "X1990.09.16" "X1990.09.17" "X1990.09.18" "X1990.09.19" "X1990.09.20" "X1990.09.21"
 [267] "X1990.09.22" "X1990.09.23" "X1990.09.24" "X1990.09.25" "X1990.09.26" "X1990.09.27" "X1990.09.28"
 [274] "X1990.09.29" "X1990.09.30" "X1990.10.01" "X1990.10.02" "X1990.10.03" "X1990.10.04" "X1990.10.05"
 [281] "X1990.10.06" "X1990.10.07" "X1990.10.08" "X1990.10.09" "X1990.10.10" "X1990.10.11" "X1990.10.12"
 [288] "X1990.10.13" "X1990.10.14" "X1990.10.15" "X1990.10.16" "X1990.10.17" "X1990.10.18" "X1990.10.19"
 [295] "X1990.10.20" "X1990.10.21" "X1990.10.22" "X1990.10.23" "X1990.10.24" "X1990.10.25" "X1990.10.26"
 [302] "X1990.10.27" "X1990.10.28" "X1990.10.29" "X1990.10.30" "X1990.10.31" "X1990.11.01" "X1990.11.02"
 [309] "X1990.11.03" "X1990.11.04" "X1990.11.05" "X1990.11.06" "X1990.11.07" "X1990.11.08" "X1990.11.09"
 [316] "X1990.11.10" "X1990.11.11" "X1990.11.12" "X1990.11.13" "X1990.11.14" "X1990.11.15" "X1990.11.16"
 [323] "X1990.11.17" "X1990.11.18" "X1990.11.19" "X1990.11.20" "X1990.11.21" "X1990.11.22" "X1990.11.23"
 [330] "X1990.11.24" "X1990.11.25" "X1990.11.26" "X1990.11.27" "X1990.11.28" "X1990.11.29" "X1990.11.30"
 [337] "X1990.12.01" "X1990.12.02" "X1990.12.03" "X1990.12.04" "X1990.12.05" "X1990.12.06" "X1990.12.07"
 [344] "X1990.12.08" "X1990.12.09" "X1990.12.10" "X1990.12.11" "X1990.12.12" "X1990.12.13" "X1990.12.14"
 [351] "X1990.12.15" "X1990.12.16" "X1990.12.17" "X1990.12.18" "X1990.12.19" "X1990.12.20" "X1990.12.21"
 [358] "X1990.12.22" "X1990.12.23" "X1990.12.24" "X1990.12.25" "X1990.12.26" "X1990.12.27" "X1990.12.28"
 [365] "X1990.12.29" "X1990.12.30" "X1990.12.31" "X1991.01.01" "X1991.01.02" "X1991.01.03" "X1991.01.04"
 [372] "X1991.01.05" "X1991.01.06" "X1991.01.07" "X1991.01.08" "X1991.01.09" "X1991.01.10" "X1991.01.11"
 [379] "X1991.01.12" "X1991.01.13" "X1991.01.14" "X1991.01.15" "X1991.01.16" "X1991.01.17" "X1991.01.18"
 [386] "X1991.01.19" "X1991.01.20" "X1991.01.21" "X1991.01.22" "X1991.01.23" "X1991.01.24" "X1991.01.25"
 [393] "X1991.01.26" "X1991.01.27" "X1991.01.28" "X1991.01.29" "X1991.01.30" "X1991.01.31" "X1991.02.01"
 [400] "X1991.02.02" "X1991.02.03" "X1991.02.04" "X1991.02.05" "X1991.02.06" "X1991.02.07" "X1991.02.08"
 [407] "X1991.02.09" "X1991.02.10" "X1991.02.11" "X1991.02.12" "X1991.02.13" "X1991.02.14" "X1991.02.15"
 [414] "X1991.02.16" "X1991.02.17" "X1991.02.18" "X1991.02.19" "X1991.02.20" "X1991.02.21" "X1991.02.22"
 [421] "X1991.02.23" "X1991.02.24" "X1991.02.25" "X1991.02.26" "X1991.02.27" "X1991.02.28" "X1991.03.01"
 [428] "X1991.03.02" "X1991.03.03" "X1991.03.04" "X1991.03.05" "X1991.03.06" "X1991.03.07" "X1991.03.08"
 [435] "X1991.03.09" "X1991.03.10" "X1991.03.11" "X1991.03.12" "X1991.03.13" "X1991.03.14" "X1991.03.15"
 [442] "X1991.03.16" "X1991.03.17" "X1991.03.18" "X1991.03.19" "X1991.03.20" "X1991.03.21" "X1991.03.22"
 [449] "X1991.03.23" "X1991.03.24" "X1991.03.25" "X1991.03.26" "X1991.03.27" "X1991.03.28" "X1991.03.29"
 [456] "X1991.03.30" "X1991.03.31" "X1991.04.01" "X1991.04.02" "X1991.04.03" "X1991.04.04" "X1991.04.05"
 [463] "X1991.04.06" "X1991.04.07" "X1991.04.08" "X1991.04.09" "X1991.04.10" "X1991.04.11" "X1991.04.12"
 [470] "X1991.04.13" "X1991.04.14" "X1991.04.15" "X1991.04.16" "X1991.04.17" "X1991.04.18" "X1991.04.19"
 [477] "X1991.04.20" "X1991.04.21" "X1991.04.22" "X1991.04.23" "X1991.04.24" "X1991.04.25" "X1991.04.26"
 [484] "X1991.04.27" "X1991.04.28" "X1991.04.29" "X1991.04.30" "X1991.05.01" "X1991.05.02" "X1991.05.03"
 [491] "X1991.05.04" "X1991.05.05" "X1991.05.06" "X1991.05.07" "X1991.05.08" "X1991.05.09" "X1991.05.10"
 [498] "X1991.05.11" "X1991.05.12" "X1991.05.13" "X1991.05.14" "X1991.05.15" "X1991.05.16" "X1991.05.17"
 [505] "X1991.05.18" "X1991.05.19" "X1991.05.20" "X1991.05.21" "X1991.05.22" "X1991.05.23" "X1991.05.24"
 [512] "X1991.05.25" "X1991.05.26" "X1991.05.27" "X1991.05.28" "X1991.05.29" "X1991.05.30" "X1991.05.31"
 [519] "X1991.06.01" "X1991.06.02" "X1991.06.03" "X1991.06.04" "X1991.06.05" "X1991.06.06" "X1991.06.07"
 [526] "X1991.06.08" "X1991.06.09" "X1991.06.10" "X1991.06.11" "X1991.06.12" "X1991.06.13" "X1991.06.14"
 [533] "X1991.06.15" "X1991.06.16" "X1991.06.17" "X1991.06.18" "X1991.06.19" "X1991.06.20" "X1991.06.21"
 [540] "X1991.06.22" "X1991.06.23" "X1991.06.24" "X1991.06.25" "X1991.06.26" "X1991.06.27" "X1991.06.28"
 [547] "X1991.06.29" "X1991.06.30" "X1991.07.01" "X1991.07.02" "X1991.07.03" "X1991.07.04" "X1991.07.05"
 [554] "X1991.07.06" "X1991.07.07" "X1991.07.08" "X1991.07.09" "X1991.07.10" "X1991.07.11" "X1991.07.12"
 [561] "X1991.07.13" "X1991.07.14" "X1991.07.15" "X1991.07.16" "X1991.07.17" "X1991.07.18" "X1991.07.19"
 [568] "X1991.07.20" "X1991.07.21" "X1991.07.22" "X1991.07.23" "X1991.07.24" "X1991.07.25" "X1991.07.26"
 [575] "X1991.07.27" "X1991.07.28" "X1991.07.29" "X1991.07.30" "X1991.07.31" "X1991.08.01" "X1991.08.02"
 [582] "X1991.08.03" "X1991.08.04" "X1991.08.05" "X1991.08.06" "X1991.08.07" "X1991.08.08" "X1991.08.09"
 [589] "X1991.08.10" "X1991.08.11" "X1991.08.12" "X1991.08.13" "X1991.08.14" "X1991.08.15" "X1991.08.16"
 [596] "X1991.08.17" "X1991.08.18" "X1991.08.19" "X1991.08.20" "X1991.08.21" "X1991.08.22" "X1991.08.23"
 [603] "X1991.08.24" "X1991.08.25" "X1991.08.26" "X1991.08.27" "X1991.08.28" "X1991.08.29" "X1991.08.30"
 [610] "X1991.08.31" "X1991.09.01" "X1991.09.02" "X1991.09.03" "X1991.09.04" "X1991.09.05" "X1991.09.06"
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 [624] "X1991.09.14" "X1991.09.15" "X1991.09.16" "X1991.09.17" "X1991.09.18" "X1991.09.19" "X1991.09.20"
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 [687] "X1991.11.16" "X1991.11.17" "X1991.11.18" "X1991.11.19" "X1991.11.20" "X1991.11.21" "X1991.11.22"
 [694] "X1991.11.23" "X1991.11.24" "X1991.11.25" "X1991.11.26" "X1991.11.27" "X1991.11.28" "X1991.11.29"
 [701] "X1991.11.30" "X1991.12.01" "X1991.12.02" "X1991.12.03" "X1991.12.04" "X1991.12.05" "X1991.12.06"
 [708] "X1991.12.07" "X1991.12.08" "X1991.12.09" "X1991.12.10" "X1991.12.11" "X1991.12.12" "X1991.12.13"
 [715] "X1991.12.14" "X1991.12.15" "X1991.12.16" "X1991.12.17" "X1991.12.18" "X1991.12.19" "X1991.12.20"
 [722] "X1991.12.21" "X1991.12.22" "X1991.12.23" "X1991.12.24" "X1991.12.25" "X1991.12.26" "X1991.12.27"
 [729] "X1991.12.28" "X1991.12.29" "X1991.12.30" "X1991.12.31" "X1992.01.01" "X1992.01.02" "X1992.01.03"
 [736] "X1992.01.04" "X1992.01.05" "X1992.01.06" "X1992.01.07" "X1992.01.08" "X1992.01.09" "X1992.01.10"
 [743] "X1992.01.11" "X1992.01.12" "X1992.01.13" "X1992.01.14" "X1992.01.15" "X1992.01.16" "X1992.01.17"
 [750] "X1992.01.18" "X1992.01.19" "X1992.01.20" "X1992.01.21" "X1992.01.22" "X1992.01.23" "X1992.01.24"
 [757] "X1992.01.25" "X1992.01.26" "X1992.01.27" "X1992.01.28" "X1992.01.29" "X1992.01.30" "X1992.01.31"
 [764] "X1992.02.01" "X1992.02.02" "X1992.02.03" "X1992.02.04" "X1992.02.05" "X1992.02.06" "X1992.02.07"
 [771] "X1992.02.08" "X1992.02.09" "X1992.02.10" "X1992.02.11" "X1992.02.12" "X1992.02.13" "X1992.02.14"
 [778] "X1992.02.15" "X1992.02.16" "X1992.02.17" "X1992.02.18" "X1992.02.19" "X1992.02.20" "X1992.02.21"
 [785] "X1992.02.22" "X1992.02.23" "X1992.02.24" "X1992.02.25" "X1992.02.26" "X1992.02.27" "X1992.02.28"
 [792] "X1992.02.29" "X1992.03.01" "X1992.03.02" "X1992.03.03" "X1992.03.04" "X1992.03.05" "X1992.03.06"
 [799] "X1992.03.07" "X1992.03.08" "X1992.03.09" "X1992.03.10" "X1992.03.11" "X1992.03.12" "X1992.03.13"
 [806] "X1992.03.14" "X1992.03.15" "X1992.03.16" "X1992.03.17" "X1992.03.18" "X1992.03.19" "X1992.03.20"
 [813] "X1992.03.21" "X1992.03.22" "X1992.03.23" "X1992.03.24" "X1992.03.25" "X1992.03.26" "X1992.03.27"
 [820] "X1992.03.28" "X1992.03.29" "X1992.03.30" "X1992.03.31" "X1992.04.01" "X1992.04.02" "X1992.04.03"
 [827] "X1992.04.04" "X1992.04.05" "X1992.04.06" "X1992.04.07" "X1992.04.08" "X1992.04.09" "X1992.04.10"
 [834] "X1992.04.11" "X1992.04.12" "X1992.04.13" "X1992.04.14" "X1992.04.15" "X1992.04.16" "X1992.04.17"
 [841] "X1992.04.18" "X1992.04.19" "X1992.04.20" "X1992.04.21" "X1992.04.22" "X1992.04.23" "X1992.04.24"
 [848] "X1992.04.25" "X1992.04.26" "X1992.04.27" "X1992.04.28" "X1992.04.29" "X1992.04.30" "X1992.05.01"
 [855] "X1992.05.02" "X1992.05.03" "X1992.05.04" "X1992.05.05" "X1992.05.06" "X1992.05.07" "X1992.05.08"
 [862] "X1992.05.09" "X1992.05.10" "X1992.05.11" "X1992.05.12" "X1992.05.13" "X1992.05.14" "X1992.05.15"
 [869] "X1992.05.16" "X1992.05.17" "X1992.05.18" "X1992.05.19" "X1992.05.20" "X1992.05.21" "X1992.05.22"
 [876] "X1992.05.23" "X1992.05.24" "X1992.05.25" "X1992.05.26" "X1992.05.27" "X1992.05.28" "X1992.05.29"
 [883] "X1992.05.30" "X1992.05.31" "X1992.06.01" "X1992.06.02" "X1992.06.03" "X1992.06.04" "X1992.06.05"
 [890] "X1992.06.06" "X1992.06.07" "X1992.06.08" "X1992.06.09" "X1992.06.10" "X1992.06.11" "X1992.06.12"
 [897] "X1992.06.13" "X1992.06.14" "X1992.06.15" "X1992.06.16" "X1992.06.17" "X1992.06.18" "X1992.06.19"
 [904] "X1992.06.20" "X1992.06.21" "X1992.06.22" "X1992.06.23" "X1992.06.24" "X1992.06.25" "X1992.06.26"
 [911] "X1992.06.27" "X1992.06.28" "X1992.06.29" "X1992.06.30" "X1992.07.01" "X1992.07.02" "X1992.07.03"
 [918] "X1992.07.04" "X1992.07.05" "X1992.07.06" "X1992.07.07" "X1992.07.08" "X1992.07.09" "X1992.07.10"
 [925] "X1992.07.11" "X1992.07.12" "X1992.07.13" "X1992.07.14" "X1992.07.15" "X1992.07.16" "X1992.07.17"
 [932] "X1992.07.18" "X1992.07.19" "X1992.07.20" "X1992.07.21" "X1992.07.22" "X1992.07.23" "X1992.07.24"
 [939] "X1992.07.25" "X1992.07.26" "X1992.07.27" "X1992.07.28" "X1992.07.29" "X1992.07.30" "X1992.07.31"
 [946] "X1992.08.01" "X1992.08.02" "X1992.08.03" "X1992.08.04" "X1992.08.05" "X1992.08.06" "X1992.08.07"
 [953] "X1992.08.08" "X1992.08.09" "X1992.08.10" "X1992.08.11" "X1992.08.12" "X1992.08.13" "X1992.08.14"
 [960] "X1992.08.15" "X1992.08.16" "X1992.08.17" "X1992.08.18" "X1992.08.19" "X1992.08.20" "X1992.08.21"
 [967] "X1992.08.22" "X1992.08.23" "X1992.08.24" "X1992.08.25" "X1992.08.26" "X1992.08.27" "X1992.08.28"
 [974] "X1992.08.29" "X1992.08.30" "X1992.08.31" "X1992.09.01" "X1992.09.02" "X1992.09.03" "X1992.09.04"
 [981] "X1992.09.05" "X1992.09.06" "X1992.09.07" "X1992.09.08" "X1992.09.09" "X1992.09.10" "X1992.09.11"
 [988] "X1992.09.12" "X1992.09.13" "X1992.09.14" "X1992.09.15" "X1992.09.16" "X1992.09.17" "X1992.09.18"
 [995] "X1992.09.19" "X1992.09.20" "X1992.09.21" "X1992.09.22" "X1992.09.23" "X1992.09.24"
 [ reached getOption("max.print") -- omitted 8498 entries ]

Wide to long data

library(lubridate)

#wide to long
SEUS_temp <- melt(allvalues_wide_latlon, id.vars = c("lat", "lon"))
colnames(SEUS_temp) <- c("lat", "lon", "date", "sst")
SEUS_temp[,date.edit := as_date(substr(date, 2, 11))][,year := year(date.edit)][,sst_avg := mean(sst, na.rm = T), by = year]

ggplot(data = SEUS_temp, aes(x=year, y = sst_avg)) +
  geom_point() +
  geom_smooth(method = lm) +
  theme_classic()

Compare to SODA temp values

readRDS(here::here("Data","Spp_master","spp_master_ztemp.rds"))

readRDS(here::here("Data","Spp_master","spp_master_ztemp.rds"))